Isotopes: Molecules containing isotopes

We know that terrestrial Cl is 75% 35Cl and 25% 37Cl. 

A molecule containing one Cl would show the same distribution, i.e., 75% H35Cl and 25% H37Cl. This would appear in mass spectrometry as two molecular ion peaks with an intensity ratio of 3:1.

An interesting question is therefore to ask what pattern would we see if there are two chlorine atoms in a molecule?

The best way to think about this is in terms of probability and choosing an isotope for each Cl in the molecule. The probability of any particular outcome, e.g., a Cl2 molecule with one 35Cl and one 37Cl, depends on two things:

  1. The abundances of each isotope. The probabilities are independent so we just multiply them (using either decimals or fractions).
  2. The number of different ways of getting the same outcome. If there are multiple ways of getting the same outcome, we multiply our result by this number.

The probability that a Cl2 molecule has one 35Cl and one 37Cl is worked out using 0.75 x 0.25 x 2= 0.375.

0.75 = The probability of choosing a 35Cl for the 1st Cl.

0.25 =  The probability of choosing a 37Cl for the 2nd Cl.

2 = the number of ways of getting a Cl2 molecule with one 35Cl and one 37Cl; it could either be 35Cl37Cl or 37Cl35Cl

Here are two further examples where all possible outcomes are considered:

Example: CH2Cl2 contains 2 Cl atoms. Describe the appearance of the molecular ion peaks in the mass spectra.

Use the following abundances of Cl in decimal form:

35Cl = 0.75

37Cl = 0.25

Answer

We must work systematically through each possible outcome to determine the appearance of the molecular ion peaks.

If there are 2 Cl atoms, the molecule can contain either 0, 1 or 2  37Cl atoms. This means there are three outcomes so there would be three molecular ion peaks.

 

Outcome 1: CH235Cl35Cl

Mass = 84

Probability = 0.75 x 0.75 = 0.5625

 

Outcome 2: CH237Cl35Cl

Mass = 86

Probability = 2 x 0.25 x 0.75 = 0.375

There are two different ways having one 37Cl in the molecule. It can either be in the 1st position (i.e., CH237Cl35Cl) or 2nd position (i.e., CH235Cl37Cl). This means that to calculate the probability, and abundance, we multiply by 2.

 

Outcome 3: CH237Cl37Cl

Mass = 86

Probability = 0.25 x 0.25 = 0.0625

 

This means that there would be 3 molecular ion peaks in the mass spectra of CH2Cl2 with an intensity ratio of 9:6:1.

 

A challenging extension of this would be to consider what happens if there are 3 Cl atoms in the molecule:

Example: CHClcontains 3 Cl atoms. Describe the appearance of the molecular ions peaks in the mass spectra.

Answer

Again, we must work systematically through each possible outcome to determine the apperance of the molecular ion peaks.

If there are 3 Cl atoms, the molecule can contain either 0, 1, 2 or 3 37Cl atoms. This means there are four outcomes so there would be four molecular ion peaks.

Outcome 1: CH35Cl35Cl35Cl

Mass = 118

Probability = 0.75 x 0.75 x 0.75 = 0.422

 

Outcome 2: CH37Cl35Cl35Cl

Mass = 120

Probability = 3 x 0.25 x 0.75 x 0.75 = 0.422

There are three different ways having one 37Cl. It can either be in the 1st, 2nd or 3rd position. This means that to calculate its abundance, we multiply by 3.

 

Outcome 3: CH37Cl37Cl35Cl

Mass = 122

Probability = 3 x 0.25 x 0.25 x 0.75 = 0.141

There are three different ways having one 35Cl. It can either be in the 1st, 2nd or 3rd position. This means that to calculate its abundance, we multiply by 3.

 

Outcome 4: CH37Cl37Cl37Cl

Mass = 124

Probability = 0.25 x 0.25 x 0.25 = 0.0156

 

This means that there would be 4 molecular ion peaks in the mass spectra of CHCl3 with an intensity ratio of 27:27:9:1.

An interesting result from this calculation is finding that having zero or one 37Cl atom in the molecule is equally likely!

If you are also studying A Level Maths, you might know where the 1, 2,1 and 1, 3, 3, 1 come from! If not, look up Pascal’s triangle and binomial expansions…